Filters VCF files
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
vcf
:file
VCF input file
*.{vcf,bcf,vcf.gz,bcf.gz}
tbi
VCF index file
*.tbi
*.${extension}
VCF filtered output file
index
*.{tbi,csi}
VCF file index
versions_bcftools
${task.process}
:string
The process the versions were collected from
bcftools
The tool name
bcftools --version | sed '1!d; s/^.*bcftools //'
:eval
The command used to generate the version of the tool
versions
Apply fixed-threshold filters to VCF files.
