fasta_bgzip_index_dict_samtools

Ensure BGZF compression, index, and produce a sequence size summary and a sequence dictionary for each FASTA file.

bgzipfaidxdictfasta

Description

Ensure BGZF compression, index, and produce a sequence size summary and a sequence dictionary for each FASTA file.

name

description

pattern

FASTA file, compressed or not.
Structure: [ val(meta), path(fasta) ]

*.{fa,fa.gz,fa.bz2,fa.xz,fasta,fasta.gz,fasta.bz2,fasta.xz}

name

description

pattern

Channel containing:

BGZF-compressed FASTA
FASTA index (.fai)
BGZF index (.gzi)
sequence size summary (.sizes)
sequence dictionary (.dict)
Structure:
[ val(meta), path(fasta_gz), path(fai), path(gzi), path(sizes), path(dict) ]

*